07:17am Wednesday 23 October 2019

Penn Study Describes Molecular Machinery that Pulls Apart Protein Clumps

However, on the flip side, the fibers can also play beneficial, protective roles. In yeast, they are associated with increased survival and the evolution of new traits. In humans, they form biological nanostructures to house pigments and other molecules and may also be central to long-term memory formation and storage. Amyloid fibers are among the most stable protein-based structures in nature, and so when they are detrimental, as in Parkinson’s disease, they are notoriously difficult for cells to break down.

In a new study published in PLoS Biology this week, James Shorter, PhD, assistant professor of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, and colleagues address an urgent need to find ways to promote beneficial amyloid fiber assembly or to reverse its pathogenic assembly, at will.

In the paper, Shorter and colleagues define the mechanisms by which small heat-shock proteins (hsp) collaborate with other molecular chaperones to regulate the assembly and disassembly of a beneficial yeast prion (an amyloid that can spread between individuals).

Yeast harbor a declumping protein called Hsp104, which rapidly disassembles amyloid fibers, and this activity is greatly enhanced by small heat shock proteins. Humans and other animals, however, lack Hsp104, and so the puzzle has always been: Can human cells also disassemble these exceptionally stable amyloid fibers?

In this study, Shorter and colleagues establish that in the absence of Hsp104, the yeast small heat shock proteins collaborate with other molecular chaperones to slowly depolymerize the amyloid fibers by removing one fiber subunit at a time from the tips of the fibers. This activity was extremely surprising as traditionally the small heat shock proteins and other molecular chaperones are famous for their duties in preventing protein clumping. They were not previously known to reverse the assembly of exceptionally stable amyloid fibers that were already formed.

Importantly, the proteins of the amyloid-depolymerase machinery is conserved to humans. Thus, even without Hsp104, human small heat shock proteins can collaborate with human molecular chaperones to slowly depolymerize amyloid fibers. For example, it is now clear that human cells harbor the necessary machinery to clear amyloid fibers connected with neurodegenerative disease.

“Remarkably, the human small heat shock protein, HspB5, stimulates other heat shock proteins, Hsp110, Hsp70, and Hsp40, to gradually depolymerize amyloid fibers formed by alpha-synuclein, which are implicated in Parkinson’s disease, from their ends on a biologically relevant timescale. Because monomers [shorter segments] are released by this system and not toxic oligomers [longer segments], we believe this is an extremely safe way to dissolve amyloid” explains Shorter.

This newly identified and highly conserved amyloid-depolymerase system could have important therapeutic applications for various neurodegenerative disorders, suggest the researchers. The goal is to stimulate the machinery in humans to pull apart the fibers where and when needed by increasing the expression of heat shock proteins to hopefully pull apart already-formed amyloid fibers. The next step will be to boost the activity of the newly discovered amyloid-depolymerase system, perhaps with drug-like small molecules, in animal models of neurodegenerative disease.

The research is supported by the American Federation for Aging Research; the William Wood Foundation; the Hereditary Disease Foundation; an NIH Director’s New Innovator Award (1DP2OD002177-01); an Ellison Medical Foundation New Scholar in Aging Award; a National Institute of Neurological Disorders and Stroke grant (1R21NS067354-0110); a Bill & Melinda Gates Foundation Grand Challenges Explorations Award; and a University of Pennsylvania Diabetes and Endocrinology Research Center Pilot and Feasibility grant.


Martin L. Duennwald and AnaLisa Echeverria from the Boston Biomedical Research Institute, Watertown, MA, are also co-authors.


Penn Medicine is one of the world’s leading academic medical centers, dedicated to the related missions of medical education, biomedical research, and excellence in patient care. Penn Medicine consists of the Raymond and Ruth Perelman School of Medicine at the University of Pennsylvania (founded in 1765 as the nation’s first medical school) and the University of Pennsylvania Health System, which together form a $4.3 billion enterprise.

The Perelman School of Medicine is currently ranked #2 in U.S. News & World Report’s survey of research-oriented medical schools. The School is consistently among the nation’s top recipients of funding from the National Institutes of Health, with $479.3 million awarded in the 2011 fiscal year.

The University of Pennsylvania Health System’s patient care facilities include: The Hospital of the University of Pennsylvania — recognized as one of the nation’s top 10 hospitals by U.S. News & World Report; Penn Presbyterian Medical Center; and Pennsylvania Hospital — the nation’s first hospital, founded in 1751. Penn Medicine also includes additional patient care facilities and services throughout the Philadelphia region.

Penn Medicine is committed to improving lives and health through a variety of community-based programs and activities. In fiscal year 2011, Penn Medicine provided $854 million to benefit our community.

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