Atomic force microscopy accurately identifies cancer in patients by examining the surface of cells expelled in urine.
MEDFORD/SOMERVILLE, Mass. (December 3, 2018) —A research team led by Tufts University engineers has developed a non-invasive method for detecting bladder cancer that might make screening easier and more accurate than current invasive clinical tests involving visual inspection of the bladder. In the first successful use of atomic force microscopy (AFM) for clinical diagnostic purposes, the researchers have been able to identify signature features of cancerous cells found in patients’ urine by developing a nanoscale resolution map of the cells’ surface, as reported today in the Proceedings of the National Academy of Sciences (PNAS).
Bladder cancer is one of the leading causes of cancer-related deaths in the United States, with the American Society of Clinical Oncologists estimating 17,240 deaths for 2018. While early detection leads to a five-year survival rate of 95 percent, bladder cancer detected at the metastatic stage leaves the patient with only a 10 percent chance of survival after five years. Current methods for detection involve cystoscopy (running a tube with a video camera into the bladder through the urethra), as well as possible biopsy, and pathology examination of the tissue sample. For patients who have been treated and are in remission, the recurrence rate is high – between 50 and 80 percent, so invasive cystoscopy exams must be conducted every three to six months at great expense and discomfort for patients.
“By introducing a non-invasive diagnostic method that is more accurate than the invasive visual examination, we could significantly decrease the cost and inconvenience to patients,” said Igor Sokolov, professor of mechanical engineering and biomedical engineering at Tufts University School of Engineering and lead author of the study. “All that is needed is a urine sample, and not only could we more effectively monitor patients after treatment, we could also more easily screen healthy individuals who may have a family history of the disease, and potentially detect the grade of cancer development. Determining the efficiency of early screening and grade detection is a separate, important task of our future research. ”
AFM involves scanning over a surface with a very small cantilever, which is deflected from its position as it passes over the bumps and valleys on the surface. Recording the deflections allows a topographical map to be created with a resolution of fractions of a nanometer. Moreover, the deflection of the AFM cantilever is indicative of some physical properties of the sample. For example, one can measure the adhesion force between the AFM probe and the sample surface. The researchers discovered that bladder cells extracted from urine of a cancer patient have unique surface features that distinguish them from cells extracted from a healthy person, allowing the researchers to apply the method as a diagnostic tool.
The diagnostic method incorporates machine learning, enabling a more accurate recognition of the signature surface features, such as adhesion, roughness, directionality, and fractal properties, among others. The AFM-based test demonstrates more than 90 percent sensitivity in detecting bladder cancer (i.e. if a person is known to have the disease, the test will detect it 90 percent of the time) versus 20 to 80 percent sensitivity for currently available non-invasive diagnostics on urine samples, such as biochemical evaluation of the biomarker NMP22, genetic analysis using fluorescence in situ hybridization, or immunocytochemistry. Specificity of AFM – the accuracy of identifying individuals who do NOT have the disease – is 82-98 percent, which is comparable to other tests.
“AFM has been around for more than 30 years, but this is the first time it has shown promise for clinical diagnostics,” said Sokolov. “The accuracy appears to be better than the current clinical standard for bladder cancer diagnosis, but we will need to test the method on a larger cohort of patients before it can be introduced into clinical practice. We are hopeful that AFM could ultimately be applied to the detection of other tumor types, such as gastrointestinal, colorectal and cervical cancers.”
Other authors of the paper are: Maxim E. Dokukin, Ph.D, post-doctoral fellow (presently a director of research of NanoScience Solutions, Inc.), Vivekanand Kalaparthi, graduate student (currently a research engineer in Micron, Inc.), Milos Miljkovic, Ph.D, former lab manager, all of the Tufts University School of Engineering’s Department of Mechanical Engineering; and Andrew Wang, a high school student who worked at Dr. Sokolov’s lab (and is currently an undergraduate at Harvard University); John D. Seigne, M.D., associate professor of surgery, Dartmouth-Hitchcock Medical Center; Petros Grivas, M.D., Ph.D., associate professor of medicine and director of the Genitourinary Cancers Program, University of Washington; and Eugene Demidenko, Ph.D., professor of biomedical data science, Geisel School of Medicine of Dartmouth College.
This work was partially supported by National Science Foundation Civil, Mechanical and Manufacturing Innovation grant #1435655 (I.S.), and funds from The Prouty Pilot Project Norris Cotton Cancer Center, Dartmouth College.
Sokolov, I., Dokukin, M.E., Kalaparthi, V., Miljkovic, M., Wang, A., Seigne, J.D., Grivas, P., Demidenko, E. “Noninvasive diagnostic imaging using machine-learning analysis of nano-resolution images of cell surfaces: detection of bladder cancer.” PNAS 2018 (3 Dec). DOI: 10.1073/pnas.1816459115
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