05:09am Saturday 21 October 2017

New Genomics Tool Could Help Predict Tumor Aggressiveness, Treatment Outcomes

Edmund Mroz and James Rocco

OSUCCC – James researchers Edmund Mroz, PhD, and James Rocco, MD, PhD, developed the MATH method.

Researchers used a new scoring method they developed called MATH (mutant-allele tumor heterogeneity) to measure the genetic variability among cancer cells within tumors from 305 patients with head and neck cancer. High MATH scores corresponded to tumors with many differences among the gene mutations present in different cancer cells.

Cancers that showed high genetic variability – called “intra-tumor heterogeneity” – correlated with lower patient survival. If prospective studies verify the findings, MATH scores could help identify the most effective treatment for patients and predict a patient’s prognosis.

Researchers have long hypothesized that multiple sub-populations of mutated cells within a single cancer lead to worse clinical outcomes; however, oncologists do not use tumor heterogeneity to guide clinical care decisions or assess disease prognosis because there is no single, easy-to-implement method of doing so in clinical practice.

To address this need, James Rocco, MD, PhD, and his colleagues developed MATH to make it easier for doctors to measure genetic variability in patients’ tumors and to help guide treatment decisions.

The new findings, reported in PLOS Medicine, confirm that high genetic variability with a patient’s tumor is related to increased mortality in head and neck squamous cell carcinoma.

“Genetic variability within tumors is likely why people fail treatment,” says Rocco, Professor and John and Mary Alford Chair of Head and Neck Surgery and Director of the OSUCCC – James Division of Head and Neck Oncologic Surgery. “In patients who have high heterogeneity tumors it is likely that there are several clusters of underlying mutations – in the same tumor – driving the cancer. So their tumors are likely to have some cells that are already resistant to any particular therapy.

Study Design and Findings

For the current study, Rocco and his team used the MATH tool to analyze retrospective data from 305 head and neck squamous cell carcinoma patients from The Cancer Genome Atlas (TCGA). This National Institutes of Health repository of publicly available data was launched in 2006 as a pilot project and now includes samples from more than 11,000 patients across 33 tumor types. The MATH score was calculated from data obtained by TCGA with a genome sequencing technique called whole-exome sequencing.

Researchers confirmed that high intra-tumor heterogeneity was related to increased mortality in this sub segment of patients. Each 10 percent increase in MATH score corresponded to an 8.8 percent increased likelihood of death.

The relationship between MATH score and mortality was not dependent on HPV (human papilloma virus) status or other molecular characteristics of the tumor.

“Our retrospective analysis showed that patients with high heterogeneity tumors were more than twice as likely to die compared to patients with low heterogeneity tumors,” says Rocco. “This type of information could refine the dialogue about how we tackle cancer by helping us predict a patient’s treatment success and justify clinical decisions based on the unique makeup of a patient’s tumor.”

Researchers believe this is the first study to combine data from hundreds of patients treated at multiple institutions in an effort to document intra-tumor heterogeneity and overall survival in any type of cancer.

Collaborators in the study include: Edmund Mroz, PhD, now of Ohio State; Aaron Tward, MD, PhD, now of The University of California, San Francisco; and Rebecca Hammon, MD and Yin Ren, MD, PhD, of Harvard Medical School (HMS). The study began at HMS, Massachusetts General Hospital (MGH), and the Massachusetts Eye and Ear Infirmary (MEEI), where Rocco and Mroz served as faculty members prior to joining Ohio State University in January 2015. Research funding was provided by the National Institute of Dental and Craniofacial Research (RO1 DE022087) and by private donations to the MEEI Bacardi Biobank Fund. MGH has applied for a patent on the MATH technology, with Rocco and Mroz as inventors.

The Concept of Intra-Tumor Heterogeneity

Normal human tissues and organs produce new cells when they are needed for growth or to repair damage. When a cell acquires a genetic change (mutation) that disrupts normal cell division, the cell and its descendants with the mutation may divide continuously. As these mutated cells grow and divide, some can accumulate additional, different mutations that allow them to grow faster, resist therapy, or spread to other parts of the body.

This gradual accumulation of multiple mutations by tumor cells can form sub-populations of cells, each carrying a different set of mutations. Researchers hypothesize that this phenomenon — known as “intra-tumor heterogeneity” — leads to worse clinical outcomes because targeted therapies are often designed to target a specific mutation, not several independent cellular mechanisms.

About The OSUCCC – James

The Ohio State University Comprehensive Cancer Center – Arthur G. James Cancer Hospital and Richard J. Solove Research Institute strives to create a cancer-free world by integrating scientific research with excellence in education and patient-centered care, a strategy that leads to better methods of prevention, detection and treatment. Ohio State is one of only 41 National Cancer Institute-designated Comprehensive Cancer Centers and one of only four centers funded by the NCI to conduct both phase I and phase II clinical trials on novel anticancer drugs. As the cancer program’s 306-bed adult patient-care component, The James is one of the top cancer hospitals in the nation as ranked by U.S. News & World Report and has achieved Magnet designation, the highest honor an organization can receive for quality patient care and professional nursing practice. At 21 floors with more than 1.1 million square feet, The James is a transformational facility that fosters collaboration and integration of cancer research and clinical cancer care.

Media Contact: Amanda J. Harper
Director, Media Relations, OSUCCC – James
614-685-5420 (direct)
614-293-3737 (media main)


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